Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
HaplotypeCaller and VariantRecalibrator with QUEUE
I have a basic question, sorry. I am trying to use HaplotypeCaller and VariantRecalibrator with QUEUE but I don't know how add:
VariantRecalibrator.mode = BOTH
HaplotypeCaller.genotyping_mode = DISCOVERY
I get a "not found: value BOTH/DISCOVERY" error.
Thank you in advance,