If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Does the walker DepthOfCoverage support multi-threading?
According to the documentation:
"This tool can be run in multi-threaded mode using this option. TreeReducible (-nt)"
When I try with GATK2.5 I get this error message:
"Invalid command line: Argument nt has a bad value: The analysis DepthOfCoverage aggregates results by interval. Due to a current limitation of the GATK, analyses of this type do not currently support parallel execution. Please run your analysis without the -nt option."
Would it work, if I upgraded to 2.7? You upgrade GATK more frequently than I change my under wear, so it is difficult to keep up Thanks!