The frontline support team will be slow on the forum because we are occupied with the GATK Workshop on March 21st and 22nd 2019. We will be back and more available to answer questions on the forum on March 25th 2019.
guide for known variants databases for non-human?
I'm trying to run GATK with the rice genome and I'm having trouble finding a known variant list of rice? Does anyone have a link or a more general list of known variant resources for other reference genomes?
Specifically, I found two rice genomes in dbSNP, but I can't find any documentation about which is which, and once I'm in the FTP site, which file I should be using?
Maybe take all the VCF files for each chromosome and cat them into one big file? Clearly, I'm a little clueless here