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[ROCKY] - VariantAnnotator GATK castor bean
I have a query regarding VariantAnnotator available at GATK for castor bean _(Ricinus communis). The castor bean genome assembly fasta file available at JCVI http://castorbean.jcvi.org/downloads.php has been download and when I run the command there was error. I would be glad and highly appreciate for your support.
java -Xmx2g -jar GenomeAnalysisTK.jar -T VariantAnnotator -I /gsf-9_rmdup_rg.bam -R /ricinus_communis_val.fa -V /gsf-9_SNP.vcf -o /gsf-9_anno.txt