If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
How to use GATK for RNA-seq analysis?
I find that among all the work flows of GATK
there are no workflows for RNA-seq analysis.
I understand that GATK mainly focuses on variant calling, can anyone tell me how to use GATK for RNA-seq analysis?