Test-drive the GATK tools and Best Practices pipelines on Terra


Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

How can I get the tagSNPs for hg19?

microtanmicrotan Member

Hi,

I am trying to use the tagSNPs(Supplementary Table 3)information now. but I noticed that the tagSNPs are based on hg18. when I try to use the tool--"lifeover" to convert them. there are always hundreds of snps failed. So could you tell me how can I get the tagSNPs based on hg19?

Thanks,
Michael

Answers

Sign In or Register to comment.