Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
How can I check the I/O of GATK?
I wanna optimize GATK with Hadoop.
GATK internally support MapReduce framework. So I wanna change framework in I/O process.
For changing framework, I'll try to analyze the source. But I exactly know the I/O process.
/BiO/tool/GenomeAnalysisTK-1.6-5-g557da77/o/org/broadinstitute/sting/gatk/io Path is right?
How compose the IO process??