Test-drive the GATK tools and Best Practices pipelines on Terra


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Does GATK give a p-value for a SNP/INDEL Call?

Is Strand Bias-Fisher's p-value the only p-value we can obtain for a SNP/INDEL call?
Do we have an option to calculate the actual HWE p-value instead of the HWE proportions?

~Thanks,
Rini

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