Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

Does GATK give a p-value for a SNP/INDEL Call?

Is Strand Bias-Fisher's p-value the only p-value we can obtain for a SNP/INDEL call?
Do we have an option to calculate the actual HWE p-value instead of the HWE proportions?




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