Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
queue with GridEngine
Dear GATK developer,
I've downloaded both the latest gatk and queue jar file. I went through most of the tutorials peacefully but no luck to run the simple helloworld queue script with GridEngine qsub. The individual qsub command works fine with suggested commands. When I looked at the error message queue.jar complains is mainly about: condor_submit: command not found. Here it confused me, what I need to install for run queue on gatk, queue.jar, GridEngine and HTCondor?