queue with GridEngine
Dear GATK developer,
I've downloaded both the latest gatk and queue jar file. I went through most of the tutorials peacefully but no luck to run the simple helloworld queue script with GridEngine qsub. The individual qsub command works fine with suggested commands. When I looked at the error message queue.jar complains is mainly about: condor_submit: command not found. Here it confused me, what I need to install for run queue on gatk, queue.jar, GridEngine and HTCondor?