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negative number of reads processed?

kmdailykmdaily Member
edited April 2013 in Ask the GATK team

I'm noticing some strange debugging output - at some point, it's started printing a negative number of reads processed?

INFO  15:42:08,286 ProgressMeter -  chr1:201849397        2.02e+08   41.7 m       12.4 s      6.4%        10.8 h    10.1 h
INFO  15:42:08,812 MuTect - [MUTECTOR] Inspected 291000 potential candidates
INFO  15:42:08,992 MuTect - [MUTECTOR] Processed 2145343203 reads in 1007 ms
INFO  15:42:10,009 MuTect - [MUTECTOR] Processed 2146343412 reads in 1017 ms
INFO  15:42:12,292 MuTect - [MUTECTOR] Processed 2147343598 reads in 2283 ms
INFO  15:42:14,516 MuTect - [MUTECTOR] Processed -2146623645 reads in 2224 ms
INFO  15:42:16,472 MuTect - [MUTECTOR] Processed -2145623536 reads in 1956 ms
INFO  15:42:19,152 MuTect - [MUTECTOR] Processed -2144623517 reads in 2680 ms
INFO  15:42:21,169 MuTect - [MUTECTOR] Processed -2143623360 reads in 2017 ms

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