The current GATK version is 3.7-0
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Picard 2.10.4 has MAJOR CHANGES that impact throughput of pipelines. Default compression is now 1 instead of 5, and Picard now handles compressed data with the Intel Deflator/Inflator instead of JDK.
GATK version 4.beta.2 (i.e. the second beta release) is out. See the GATK4 BETA page for download and details.

Getting key

Member

At Dartmouth, we want to run gatk via a galaxy server. The tool on the server runs it in a way that it requires the key. I attempting to get the key the following error comes back:
Proxy Error

The proxy server received an invalid response from an upstream server.
The proxy server could not handle the request POST /gatk/confirm-request.php.

Reason: Error reading from remote server

We don't use a proxy server or restrict access on any ports outbound.

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