Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
I followed the instructions on the following page to install gsalib:
It is a very detail one. However, after I git clone the repository "gate-protected" (the source-code under download page point to this git repository) and type "ant gsalib" inside,it gives error information:
[taskdef] Could not load definitions from resource cloverlib.xml. It could not be found.
[exec] * installing to library ‘/Users/yingsh/home/github/gatk-protected/public/R/src/org/broadinstitute/sting/utils/R/gsalib’
[exec] * installing source package ‘gsalib’ ...
[exec] ERROR: a 'NAMESPACE' file is required
[exec] * removing ‘/Users/yingsh/home/github/gatk-protected/public/R/src/org/broadinstitute/sting/utils/R/gsalib/gsalib’
/Users/yingsh/home/github/gatk-protected/build.xml:1052: exec returned: 1
Total time: 4 seconds
Could you help me to fix this?