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Why GenomicsDBImport is not taking the argument --genomicsdb-update-workspace-path ?

abhishekpandaabhishekpanda IndiaMember
edited December 2019 in Ask the GATK team
Dear GATK team,

The following error message I am getting, when I am trying to update my existing datastores with some new g.vcf files:-


A USER ERROR has occurred: genomicsdb-update-workspace-path is not a recognized option


Command used is as follows:-

"gatk GenomicsDBImport -V ../../path/to/file1.g.vcf -V ../../path/to/file2.g.vcf --genomicsdb-update-workspace-path /path/to/existing/datastore"

Kindly help in resolving this issue.

Thank you ,


Abhishek Panda


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