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How to continue a interupted GATK work, and how can I use multi threads to call short variants?

  1. Sometimes, my GATK works were interupted due to somemajeure,such as the power cut off. So how can I continue a interupted GATK work, like HaplotypeCaller?
  2. As a work of GATK always takes a long time, how can I speed up my short variant work, such as HaplotypeCaller pipline?

Answers

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