Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
how to solve a problem with the depthofcoverage input format?
Hello, I´m trying to use deptofcoverage to check the coverage of my reads. I already have the indexed bam files (created with sam to bam) and also reordered (reorder SAM/BAM) but they are still not recognized by depthofcoverage and I got this error message:
"Sequences are not currently available for the specified build"
I used "human (homo sapiens) hg19 full" for mapping but I can´t select it, it only allows b37 version.
Thank you very much in advance