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Terra mitochondrial variant calling pipeline with WES data?

ajwilsajwils Baltimore, MD -- JH GenomicsMember

Is the Best Practices workflow on TERRA for mitochondrial variant calling compatible with WES data as well as WGS? I assume you would need a different interval list.

Also, is it possible to do a liftover of all those shifted references back to hg19/v37?

Answers

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