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Which resources for FilterVariantTranches?

Hi all,

The current FilterVariantTranches documentation seems to imply the recommended resource for this tool are Mills and HapMap. But since that tool's function is not dissimilar to VQSR, should I actually use the same resources for VQSR (HapMap, Omni, 1000G, dbSNP, Mills)?

Thanks for your help!

Answers

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