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Select INDELs using an interval file
Hi, I used SelectVariants (GATK 4.0) to extract INDELs by providing the start positions of the desired loci using the -L option and an interval file wit start positions in GATK format. However, the tool extracts desired loci plus extra INDELs that I did not specify. The tool clearly selects out the INDELs that I desire but why are these extra loci selected as well?