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Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

FYI: GATK is able to complete all my workflows using OpenJDK 11.0.4

SkyWarriorSkyWarrior TurkeyMember ✭✭✭


I wanted to inform the devs and the community that the latest version of GATK is able to complete all my local workflows using OpenJDK 11.0.4 (AdoptOpenJDK). This was tested on Debian 10 and I was wondering if this is due to the updated HTSJDK which states in the github that 2.20 is tested against Java 11 as well. Unfortunately I was unable to compile the GATK package using Java 11 (albeit htsjdk compiles successfully under Java 11 !) but running under Java 11 does not seem to cause any issues.

Just my 2 cents on this matter.



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