Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Setting a specific seed when using GATK
I just heard that one should set a "fixed seed" when analyzing data using GATK (HapltypeCaller) in order to get always the same results (reproducibility issue). First, is that true? Second, If yes, how can one do that please?
I am using GATK 18.104.22.168 and the commands are executed using WDL.