Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
gatk4 RNA-seq suggested hard filter for best practice
What are the suggested gatk4 hard filters for variants called from RNA-seq?
I found this one
this gives filters for gatk3. Is this the same for gatk4? If not can you please point out to me to the right link ?