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Missing data files from tutorial 7869

Avatar2112Avatar2112 Broad InstituteMember

Hi,

I'm working with a collaborator to run this tutorial with some of his undergrad classes:

https://gatkforums.broadinstitute.org/gatk/discussion/7869/howto-discover-variants-with-gatk-a-gatk-workshop-tutorial

The tutorial seems straightforward, except that there is a lot of inconsistencies with the data links. The link in the tutorial doesn't work, the first one in the comments doesn't either. The 2nd link in the comments does work but provides an incomplete data set (no ICE/NEX files), whereas the 3rd link appears to be a completely different data set not associated with this tutorial.

I spent some time going through the presentations pages, but the links there are unclear with regards to the currennt versions of tutorials, and also a) the PDFs contain many of the same links that don't work and b) sometimes the files are renamed (e.g. motherBAM) but I think are the same files?

Any advice how to just get the data files for the tutorial?
~Jeremy

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