Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

Where is the folder cohort23-twelve in GATK germilineCNV calling pipeline ?


I am following this for calling germline variants. In the section GermlineCNVCaller in COHORT MODE , output folder is --output cohort24-twelve, however, in the section GermlineCNVCaller in CASE MODE , the model folder name is different --model cohort23-twelve/cohort23-twelve_1of2-model.

I am wondering where this folder (cohort23-twelve) came from ?


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