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GenotypeGVCFs Multithreading Option???

AlexandraAlexandra ItalyMember
Dear all,
I parallelized GenotypeGVCF for chromosome, but it is still slow and takes more than walltime=100:00:00. I saw that for gatk4 there are not the parameter -nt or ntc .... but it is possible to use spark mode. However, GenotypeGVCF is not a Sparke enable tool, so I was wondering how I can use it on GenotypeGVCF? Sorry, I'm new :)


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