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GATK3.8 SNP near the INDEL region with something different

TomliuTomliu Member
edited June 2019 in Ask the GATK team
I filter the SNP by using GATK3.8. When I check the SNP manually, I found this site with AD 15,0 and GT 0/1. I'm not sure about this result. Is it wrong ? or could I change the GT manually?
Thanks in advance


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