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Test-drive the GATK tools and Best Practices pipelines on Terra


Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

How to determine or calculate the read structure parameter in module IlluminaBasecallsToSam ?

I was trying to convert basecall files into unmapped BAM files using the picard module IlluminaBasecallsToSam where I came across the parameter Read Structure. So I am wondering what value should I pass to this parameter. How to find out read structure for my basecall files?

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