Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Latest Mutect2 (22.214.171.124) tutorial missing CalculateContamination ?
I was going through the latest Mutect2 tutorial:
and it doesn't seem to include the CalculateContamination step. Is it assumed that this should still be run as in the earlier (deprecated) Mutect2 tutorial provided here?