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Latest Mutect2 (4.1.1.0) tutorial missing CalculateContamination ?

bhaasbhaas Broad InstituteMember, Broadie

I was going through the latest Mutect2 tutorial:

https://gatkforums.broadinstitute.org/gatk/discussion/24057/how-to-call-somatic-mutations-using-gatk4-mutect2#latest

and it doesn't seem to include the CalculateContamination step. Is it assumed that this should still be run as in the earlier (deprecated) Mutect2 tutorial provided here?

https://gatkforums.broadinstitute.org/gatk/discussion/11136/how-to-call-somatic-mutations-using-gatk4-mutect2#1

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