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Test-drive the GATK tools and Best Practices pipelines on Terra


Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

Running Mutect2 on tumor-only mode in Firecloud

Hi, I have exomes for several tumors without any matched normals. I am trying to call mutations using Mutect's tumor-only mode in the featured "Somatic-SNVs-Indels-GATK4" workspace. However, in this workspace, I only see methods for a matched tumor-normal pair or to create a panel of normal. Can you please tell me how can I run Mutect in tumor only mode in Firecloud? Thanks!

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