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A USER ERROR has occurred: v is not a recognized option

I came across this error when I collate all the normal VCFs into a single callset with CreateSomaticPanelOfNormals
Syntax as "Java -jar -Xmx16g ./gatk-package-4.1.2.0-local.jar CreateSomaticPanelOfNormals \
-vcfs tutorial_11136/3_HG00190.vcf.gz \
-vcfs tutorial_11136/4_NA19771.vcf.gz \
-vcfs tutorial_11136/5_HG02759.vcf.gz \
-O 6_threesamplepon.vcf.gz"
I tried in Cygwin and Powershell in my PC.
Any suggestion?

Answers

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