We've moved!
This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!

Processing Whole Exome samples with GATK4 Best practice workflow

What is the recommendation for processing WES samples with [PairedEndSingleSampleWf-fc-hg38.wdl] (https://github.com/gatk-workflows/broad-prod-wgs-germline-snps-indels/blob/master/PairedEndSingleSampleWf-fc-hg38.wdl) regarding capture kit intervals file. Shell I use it instead recommended wgs_calling_regions.hg38.interval_list or apply capture kit intervals file to the final raw VCF file?


Sign In or Register to comment.