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Preparing input file for GISTIC2


I am trying to prepare input files for GISTIC2 but I am getting

[[email protected] man]$ ./run_gistic_example
--- creating output directory ---
--- running GISTIC ---
Setting Matlab MCR root to ./MATLAB_Compiler_Runtime
GISTIC version 2.0.23
GISTIC 2.0 input error detected:
80 segment start or end positions in './examplefiles/segmentationfile.txt' do not match any markers in './examplefiles/markersfile.txt'.
First bad position is 1:2063094 at line 1.
[[email protected] man]$

I heard that GISTIC2 no longer needs marker file; How I could skip demanding marker file by GISTIC2 please?


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