We've moved!
This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!

How to use multiple inputs in MarkDuplicatesSpark

Dear GATK team, the possibility to use multiple inputs in MarkDuplicatesSpark has recently been added.
However I do not fully understand how to define it on the command line as I have not found examples.

With the picard MarkDuplicates you specifies multiple -I options. But in the documentation of MarkDuplicatesSpark the --input option is noted as a List[string] type, how does it work?

By the way, do you have documentation somewhere listing all the variable types with examples? this would be very helpful.

Thanks for your help.

Best Answer


Sign In or Register to comment.