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[GATK 188.8.131.52] FilterMutectCalls based on Strand Odds Ratio value?
Hi, I was able to get SOR values in the vcf file using Mutect2 --annotation StrandOddsRatio option in GATK 184.108.40.206 to filter out calls with high SOR values.
But I can't find any filtering option to use this value with FilterMutectCalls in GATK 220.127.116.11 version. I only see the option --min-reads-per-strand. How can I filter out strand-biased calls in GATK 18.104.22.168 version?