We've moved!
This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!

MarkDuplicatesSpark raised a error : Multiple inputs but sorted in coordinate order

"A USER ERROR has occurred: Multiple inputs to MarkDuplicatesSpark detected but input abcd_lane1.bam was sorted in coordinate order."

  1. All inputs are sorted in coordinate order.
  2. When i used non-spark version, the error didn't occur.

Does the spark-version need the inputs which are sorted in other ways?

I can't find any reference from the manuals.

Could you help me to solve this problem?
Thank you in advance.

Answers

Sign In or Register to comment.