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How fix error "INVALID_MATE_REF_INDEX"?

mohamadzamanimohamadzamani Member
edited April 9 in Ask the GATK team
What is meaning of error "INVALID_MATE_REF_INDEX" in a SAM/BAM file and How fix it?
Post edited by mohamadzamani on

Best Answer

Answers

  • bhanuGandhambhanuGandham Cambridge MAMember, Administrator, Broadie, Moderator admin
  • mohamadzamanimohamadzamani Member
    Dear
    I previously saw above link in detail. In this page, only possible problems were listed and no details or solution provided for them. This is a clear weak point for GATK, which cant properly guide users.
  • mohamadzamanimohamadzamani Member
    Dear bhanuGandham
    Many thanks indeed for your reply.
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