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picard samtofastq error of unmapped reads
I fisrt extract all mapped reads
samtools view -h -F 4 xx.hlamap.sam > xx.mapped.sam
then convert it
java -jar picard.jar SamToFastq I=xx.mapped.sam F=xx.hlatmp.1.fastq F2=xx.hlatmp.2.fastq
but it has errors like following, how should I revise it, thanks a lot