Test-drive the GATK tools and Best Practices pipelines on Terra
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Known Issues with Mutect2 GATK4.1
bhanuGandham Cambridge MAMember, Administrator, Broadie, Moderator admin
edited March 20 in Solutions to Problems
java.lang.IllegalArgumentException: log10p: Log10-probability must be 0 or lesswhen running FilterMutectCalls(GATK4.1) to Filter VCF results called by Mutect2.
This error is fixed in master as of March 19th 2019. It will be released in the GATK version 220.127.116.11.