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How are the unmapped.bam files created ?

jaideepjoshijaideepjoshi Member
edited March 16 in Ask the GATK team

Following GATK best practices (5$ pipeline/broad-prod-wgs-germline). Could someone please tell me:
1. What kind of "source" files (BCL/FASTQ/BAM), are used to CREATE the unmapped.bam files ?
2. If possible, where can I find these "source" files. ?


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