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Test-drive the GATK tools and Best Practices pipelines on Terra


Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

How to make somatic variant calls from RNA-Seq data (tumor) and whole exome data (matched normal)

I'm in a situation to make variant calls from a mouse tumor cell line. We have RNA-Seq data from this tumor cell line but for the matched normal, what we have is the whole exome sequencing data. Is there any tools/workflows I can use in this case? Thanks!

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