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Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

Mutect2 allele specific stats for Multiallelic sites


I want to have allele specific stats for multi allelic sites. I was able to have this information by using other somatic variant callers, but I couldn’t get that info from neither mutect2 nor mutect1.

If you would give one possible way either mutect (I think you aren’t supporting right now) or mutect2 I would appreciate.

Thanks in advance, Gufran


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