Heads up:
We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!

Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

Mutect2 allele specific stats for Multiallelic sites


I want to have allele specific stats for multi allelic sites. I was able to have this information by using other somatic variant callers, but I couldn’t get that info from neither mutect2 nor mutect1.

If you would give one possible way either mutect (I think you aren’t supporting right now) or mutect2 I would appreciate.

Thanks in advance, Gufran


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