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Mutect2 allele specific stats for Multiallelic sites


I want to have allele specific stats for multi allelic sites. I was able to have this information by using other somatic variant callers, but I couldn’t get that info from neither mutect2 nor mutect1.

If you would give one possible way either mutect (I think you aren’t supporting right now) or mutect2 I would appreciate.

Thanks in advance, Gufran


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