The parameter --model of DetermineGermlineContigPloidy when use CASE mode

When I use DetermineGermlineContigPloidy about CASE mode:
gatk DetermineGermlineContigPloidy \
--model a_valid_ploidy_model_dir
--input normal_1.counts.hdf5 \
--input normal_2.counts.hdf5 \
... \
--output output_dir \
--output-prefix normal_case
How can I get this file ' a_valid_ploidy_model_dir', or generate it ? Is there some command line do it ?

Best Answer


  • xinzhengxinzheng Member
    Thanks very much!
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