Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

Annotation Problems


I have run variant annotation modules on my variant before hard filtration step. All the upstream steps are processed via GATK4. Then, MQRankSum annotations are missing for 20% of my variants. Do you know why does it happen ? Is it normal ?



Best Answer


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