If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Is it possible to use vcf file as the input of the GenomeSTRiP?
Dear GenomeSTRiP users,
I am using Genome STRiP for the cohorts that I only have the bcf or vcf files. Is there anyway to use the vcf files as the input to Genome STRiP? Because I rarely saw people can convert vcf back to bam files... Thank you very much.