A strange INDEL with AD and DP are zeros

Hi there,
Here is the mutation.
4 5858712 . G GTTATCACCACTATCATTATCACCCCACCACCATCATCACCATCACCACCACCACCATCATCATTACTAACATTATCACCACCACCACCATCACCACCATCATCACCACCGCCACCATCCACTATCATCACCACCATCCACTA,GTTATCACCACTATCATTATCACCCCACCACCATCATCACCATCACCACCACCACCATCATCATTACTAACATTATCACCACCACCACCATCACCACCATCATCACCACCGCCACCATCCACTATCATCACCACCATCCACTATCATCACCACCATCCACTA 1155.73 . AC=1,1;AF=0.500,0.500;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;SOR=0.693 GT:AD:DP:GQ:PL 1/2:0,0,0:0:99:1193,321,251,263,0,191
Why it call out the mutation but the AD and DP in FORMAT are both zeros. Is this mutation can be trusted or not?
Best Answer
-
bshifaw moon admin
Hi @btrspg ,
This discussion should help clear things up : Allele Depth (AD) is lower than expected
Let us know if you have any more questions.
Answers
Hi @btrspg ,
This discussion should help clear things up : Allele Depth (AD) is lower than expected
Let us know if you have any more questions.
Thanks, it real helps me.