Test-drive the GATK tools and Best Practices pipelines on Terra


Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

Getting the absolute (not %) of 'USABLE_BASES_ON_TARGET'

I am using PICARD HsMetric. I would like to get the total number of bases on target that are usable (not duplicates) for variant calling. I can output this as a percentage (PCT_USABLE_BASES_ON_TARGET), but I am not sure how to convert this into absolute number of bases (because there are so many metrics outputted by this tool).

Best Answer

Answers

  • mbyvcmmbyvcm Member

    Thank you very much. I will do just that.

Sign In or Register to comment.