Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Illumina ICE interval list
Hi! I am using the Featured/Best practices workspace Somatic-SNVs-Indels-GATK4 to analyze WES samples. My samples were analyzed using Illumina's ICE exome capture kit, and I have a list of intervals (attached). I am wondering whether the "workspace.intervals" attribute in method configurations of this workspace already includes this Illumina ICE exome interval list, and if not, how do I upload this interval list into my method configuration as an attribute?