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GATK3 VariantFiltration is not working

TomWillDoTomWillDo Member
edited December 2018 in Ask the GATK team
EDIT:

I think I've understood what is happening. "FS > 30" doesn't mean "keep FS values above 30", it means to "filter them out", which after doing some reading is what we want. Apologies for my misunderstanding! Not sure how to delete this post.
Post edited by TomWillDo on

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