The frontline support team will be slow on the forum because we are occupied with the GATK Workshop on March 21st and 22nd 2019. We will be back and more available to answer questions on the forum on March 25th 2019.
GenomicsDBImport and Strand Bias
in the joint-calling pdf, of the workshop with the number 1809, you explain why is important to use GenomicsDB, combine all samples (g.vcf)...
If I provide to my g.vcf files the strand bias information (SB) at the HaplotypeCaller level, then the downstream tools will use the SB information to filter my variants? If yes, at which level/tool? I have to add any special option?