Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
GenomicsDBImport and Strand Bias
in the joint-calling pdf, of the workshop with the number 1809, you explain why is important to use GenomicsDB, combine all samples (g.vcf)...
If I provide to my g.vcf files the strand bias information (SB) at the HaplotypeCaller level, then the downstream tools will use the SB information to filter my variants? If yes, at which level/tool? I have to add any special option?