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GenomicsDBImport and Strand Bias

manolismanolis Member ✭✭
edited December 2018 in Ask the GATK team

Hi,

in the joint-calling pdf, of the workshop with the number 1809, you explain why is important to use GenomicsDB, combine all samples (g.vcf)...

If I provide to my g.vcf files the strand bias information (SB) at the HaplotypeCaller level, then the downstream tools will use the SB information to filter my variants? If yes, at which level/tool? I have to add any special option?

Best
Manolis

Post edited by manolis on

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