How to run Variant Quality score relcalibration on non-human dataset
I am working on Soybean plant dataset for variant and genotype analysis. As soybean is not very well annotated as Human's I was wondering how can I go forward in doing the vqsr analysis. Kindly detail me as what all I can do in order to finish analysis. I did not use any annotations while using base recalibration. I was wondering if I can go ahead in the same way for vqsr.