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SelectVariants - All Samples
I've been trying to use selectvariants to select SNPs where all samples have a depth greater than 10 at that site. However, when using the
command, it outputs SNPs were at least one sample has a depth greater than 10 at that site. Is it possible to do for all samples with selectvariants, or would you have to run it for each sample, and then combinevariants? As that could take quite a while for large sample sets.